Neurobagel CLI: Command line tool for Neurobagel data parsing and annotation

Zenodo (CERN European Organization for Nuclear Research) 2026 Open access

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Authors: Sebastian Georg Wenzel Urchs, Alyssa Dai, Jonathan Armoza, Arman Jahanpour, Nikhil Bhagwat, Jean‐Baptiste Poline
DOI: 10.5281/zenodo.18189201
Cited by: 0

Abstract

The Bagel CLI is a simple Python command line tool to automatically read and annotate a [BIDS dataset](https://bids-specification.readthedocs.io/en/stable/) so that it can be integrated into the Neurobagel graph.

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
8 January 2026