SingleRepExplorer: An Interactive Web Application for Integrated Single-Cell Transcriptomic and Immune Repertoire Analysis

SingleRepExplorer is a web-based interactive tool that integrates single-cell RNA-seq transcriptomic analysis with TCR/BCR immune repertoire profiling in a single no-code platform. Built on R Shiny and distributed via Docker, it enables biologists without programming expertise to perform clustering, differential expression, pathway enrichment, trajectory inference, cell-cell communication, and clonotype analyses through an intuitive GUI.