kmer indices for https://github.com/cancer-genomics/artemis_pipeline

Zenodo (CERN European Organization for Nuclear Research) 2026 Dataset Open access

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Authors: Akshaya Vijaya Annapragada
DOI: 10.5281/zenodo.18217527
Cited by: 0

Abstract

kmer indices for use with https://github.com/cancer-genomics/artemis_pipeline The github link above is an up-to-date code repository for the feature generation pipeline originally described in Annapragada et. al., Science Translational Medicine, 2024 ("Genome-wide repeat landscapes in cancer and cell-free DNA ", DOI: 10.1126/scitranslmed.adj928). The zip files here are to be downloaded and used with that repository to generate repeat landscape features from whole genome sequencing data.

Fields of Study & Subjects

Cancer Genomics and Diagnostics Genomics and Phylogenetic Studies Fractal and DNA sequence analysis

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
12 January 2026
Document type
Dataset