Processed snRNA-seq Seurat object for cortices of the MCT8-OATP1C1-deficient Allan-Herndon-Dudley Syndrome mouse model

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Authors: Ekta Pathak, Paul T. Pfluger
Cited by: 0

Abstract

This dataset contains a processed snRNA sequencing dataset stored as a Seurat object (.rds). The object includes normalized gene expression data, cell-level metadata, dimensionality reductions (PCA and UMAP), and cell-type annotations. Organism: Mus Musculus Tissue: cortical hemispheres and attached cerebral nucleiGroups: 3 x WT, 3x dKO (global, MCT8 & OATP1C1)Mouse Info: age of sampling at P21, pure C57BL/6J background. Animals were pooled from multiple litters to minimize litter effects. All mice were group-housed on a 12:12-h light-dark cycle at 23°C and fed standard chow diet ad libitum Technology: 10x Genomics Nuclei: 77897 Genes: 22545 Data processing was performed using Seurat (v4).

Fields of Study & Subjects

Single-cell and spatial transcriptomics Genetics and Neurodevelopmental Disorders Metabolomics and Mass Spectrometry Studies

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
12 January 2026
Document type
Dataset