christine-liu/SQANTI3: Modified SQANTI3 with NNC feature annotation

Zenodo (CERN European Organization for Nuclear Research) 2026 Open access

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Authors: Pablo Atienza, Ángeles Arzalluz-Luque, Liudmyla Kondratova, Carolina Monzó, FJPardoPalacios, Fabián Robledo Yagüe, Tianyuan Liu, Elizabeth Tseng, Pedro Salguero, Alejandro Paniagua, Mark Diekhans, Alessandra Martinez
+13 more Ana Conesa, netanyak, Carlos Blanco, Boryana S. Koseva, Fabian Jetzinger, Christine Liu, Connor T. Jops, ozkanaydemir, Sean Bresnahan, dva5, Ikko Eltociear Ashimine, Moray Smith, Fairlie Reese
DOI: 10.5281/zenodo.18249341
Cited by: 0

Abstract

SQANTI3 v4.1 forked from Conesa Lab and modified to add features. I edited the sqanti_qc.py file to identify different features of novel not in catalog isoforms like novel exons, alt 5 junctions, alt 3 junctions, etc. These modifications are described in detail in this publication.

Fields of Study & Subjects

Genomics and Phylogenetic Studies RNA Research and Splicing Single-cell and spatial transcriptomics

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
14 January 2026