harrison-anth/single_msi: v1.0.0
Abstract
Initial release of the SINGLE-MSI pipeline. This first release is primarily to associate a DOI with the pipeline. Future development goals are as follows: 1.) Create separate files for each rule to help users incorporate multi-threading and custom filter/cluster settings 2.) Combine FASTQ/MTX file workflows with automatic file detection 3.) Include small reference transcriptome to verify installation of FASTQ Snake file 4.) Containerize workflow to optionally not install each software
Fields of Study & Subjects
Single-cell and spatial transcriptomics
Genomics and Phylogenetic Studies
Scientific Computing and Data Management
Publication details
- Journal / source
- Zenodo (CERN European Organization for Nuclear Research)
- Publication date
- 14 January 2026