An interactive version of Fig. 10 in A nanopathology pipeline for clinical research across scales using human tissue

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Authors: Xiaofan Xiong
Cited by: 0

Abstract

This is an interactively explorable version of Figure 10 for further visualisation of the cells corresponding to each point in all UMAP plots. Instructions: after downloading the unzip the files, simply open one of the 2 html file and click on a point in any of the 4 UMAPs to show the visualisation of the corresponding cell on the top right. All 4 labels as well as the cell ID are shown on top of the visualisation. There are 2 html files: "Interactive_UMAP_images.html" only shows the middle slice of each cell ROI while "Interactive_UMAP_videos.html" shows a movie of the whole 3D volume.

Fields of Study & Subjects

Cell Image Analysis Techniques Single-cell and spatial transcriptomics AI in cancer detection

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
1 January 2026