Krichevsky-Lab/smallRNA_seq_pipeline: v1.0.0

Zenodo (CERN European Organization for Nuclear Research) 2026 Open access

Read full text
Authors: liendnguyen1
DOI: 10.5281/zenodo.18264192
Cited by: 0

Abstract

Changes in v2.0.1 Extended pipeline to support both mouse and human small RNA-seq data Reference files replaced with single input file; index is built automatically by the pipeline Removed unused reference folders (longrna, pirna, rrna, smallrna, trna, univec) Updated environment dependencies (pixi.toml) Removed Dockerfile (to be updated in a future release)

Fields of Study & Subjects

Genomics and Phylogenetic Studies Single-cell and spatial transcriptomics RNA Interference and Gene Delivery

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
16 January 2026