MS2DeepScore supplementary test models
Abstract
The models appended here are used for tests in the supplementary information of the paper "Cross ionization mode chemical similarity prediction between tandem mass spectra in metabolomics". Description of models: ms2deepscore_trained_on_positive: Model trained on only positive ionization mode spectra, used for Supplementary Note 4. ms2deepscore_trained_on_negative: Model trained on only negative ionization mode spectra, used for Supplementary Note 4. ms2deepscore_trained_with_minimum_number_of_peaks: Only spectra with a minimum number of 5 peaks were used for training the models. This was used in Supplementary Figure 1.1. Hyperparameter_optimization_history_and_settings: The losses for many training runs done for hyperparameter optimization. These are used to make Supplementary Figure 1.2-1.7
Fields of Study & Subjects
Metabolomics and Mass Spectrometry Studies
Mass Spectrometry Techniques and Applications
Computational Drug Discovery Methods
Publication details
- Journal / source
- Socio-Environmental Systems Modeling
- Publication date
- 16 January 2026
- Document type
- Dataset