MS2DeepScore supplementary test models

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Authors: Niek De Jonge
Cited by: 0

Abstract

The models appended here are used for tests in the supplementary information of the paper "Cross ionization mode chemical similarity prediction between tandem mass spectra in metabolomics". Description of models: ms2deepscore_trained_on_positive: Model trained on only positive ionization mode spectra, used for Supplementary Note 4. ms2deepscore_trained_on_negative: Model trained on only negative ionization mode spectra, used for Supplementary Note 4. ms2deepscore_trained_with_minimum_number_of_peaks: Only spectra with a minimum number of 5 peaks were used for training the models. This was used in Supplementary Figure 1.1. Hyperparameter_optimization_history_and_settings: The losses for many training runs done for hyperparameter optimization. These are used to make Supplementary Figure 1.2-1.7

Fields of Study & Subjects

Metabolomics and Mass Spectrometry Studies Mass Spectrometry Techniques and Applications Computational Drug Discovery Methods

Publication details

Journal / source
Socio-Environmental Systems Modeling
Publication date
16 January 2026
Document type
Dataset