kentaro-abe-collab/mouse-brain-receptor-uniformity: v1.0.5 — Cross-regional uniformity framework (documentation-only update)
Abstract
This release corresponds to the manuscript: "Cross-regional uniformity of neurotransmitter receptor transcript detection across the adult mouse brain." Version v1.0.1 provides a fully reproducible snapshot of the analysis pipeline and all derived outputs used in the manuscript. Contents Final Python analysis pipeline with fixed random seed specification (Mouse_brain_receptor_uniformity_pipeline.py) Pinned Python package dependencies (requirements.txt) Region-wise detection fractions and primary cell counts Region × gene compositional tables used for visualization Gene-wise uniformity summaries based on absolute percentage-point differences (U75, U95) Cross-regional Aitchison distance matrix Hierarchical bootstrap outputs (replicate-level distributions and 95% confidence intervals) Publication-ready figures corresponding to Figure 1 and Figure 2 Run metadata and analysis logs documenting software versions and analysis parameters This release is intended to serve as a stable reference point for reproducibility and reuse.
Fields of Study & Subjects
Single-cell and spatial transcriptomics
Neuroscience and Neuropharmacology Research
Genomics and Phylogenetic Studies
Publication details
- Journal / source
- Zenodo (CERN European Organization for Nuclear Research)
- Publication date
- 16 January 2026