PlantGATA v1.0 – Plant GATA Transcription Factor Dataset
Abstract
The PlantGATA v1.0 dataset contains comprehensive information on plant GATA transcription factors (TFs), including predicted protein sequences, functional annotation, gene structure, and genome metadata. This release includes:- FASTA sequences of all predicted GATA TF proteins (PlantGATA_all_proteins_13969GATA.fasta) and the high-confidence subset (PlantGATA_all_highlyconf_proteins_13101GATA.fasta)- Well-curated reference set of experimentally validated GATA TFs (PlantGATA_well_curated_700GATA.fasta)- Annotation tables: - Detailed Information of All GATA TFs.csv - Detailed Information of All Gene Structure.csv - Detailed Information of All Genomes.csv - GATA TF - Loci Mapping.csv - Biological Function of GATA TFs.csv - Genome-wide Identification Study.csv - Total Genome Statistics.csv- SHA-256 checksum for data integrity verification (PlantGATA_v1.0.sha256)- Readme with dataset description and usage instructions (readme.md) Methods Summary:- Protein domain annotation: InterProScan v5.74, Pfam PF00320, E-value cutoff 1e-5- Post-processing scripts for data parsing and gene/transcript mapping- Quality control includes minimum domain coverage, zinc-finger integrity check, and exclusion of chimeric or partial sequences- All sequences are mapped to their corresponding loci and source genomes This dataset supports reproducible research and cross-species functional analysis of plant GATA transcription factors. It is licensed under CC-BY 4.0.
Fields of Study & Subjects
Plant Molecular Biology Research
Genomics and Phylogenetic Studies
Chromosomal and Genetic Variations
Publication details
- Journal / source
- Zenodo (CERN European Organization for Nuclear Research)
- Publication date
- 19 January 2026
- Document type
- Dataset