Supplementary Data for: Conformational Gating Mechanism and Bioavailability Trap in Deep-sea Reductive Dehalogenases

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Authors: Chao Yang, Enlu Xing, Rui Fu
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Abstract

This dataset contains supplementary materials supporting the manuscript "Conformational Gating Mechanism and Bioavailability Trap in Deep-sea Reductive Dehalogenases". The data includes: 1. Metagenomic sequence metadata and filtered V3 datasets. 2. AlphaFold2 predicted structures (PDB format). 3. GROMACS molecular dynamics parameter files (.mdp). 4. Custom analysis scripts for data mining, plotting, and PyMOL visualization.

Fields of Study & Subjects

Protein Structure and Dynamics Enzyme Structure and Function Enzyme Catalysis and Immobilization

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
20 January 2026