TXTree Usage Example: Neglected Diseases

Zenodo (CERN European Organization for Nuclear Research) 2026 Open access

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Authors: Diogo de Jesus Soares Machado, Roberto Tadeu Raittz
DOI: 10.5281/zenodo.18370865
Cited by: 0

Abstract

This is a usage example for TXTree, a command-line utility that processes PubMed data to generate HTML-TM (Hypertext Markup Language for Text Mining). HTML-TM provides a portable, browser-based platform for literature exploration and analysis. TXTree is freely available on SourceForge (https://sourceforge.net/projects/txtree/). The provided materials comprise complete HTML-TM renderings of a "neglected diseases" dataset, along with all executable scripts and the outputs generated by a programmatic pipeline.

Fields of Study & Subjects

Biomedical Text Mining and Ontologies Computational and Text Analysis Methods Digital Humanities and Scholarship

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
28 January 2026