Data and code for: Dynamic transposable element expression during Hydra head regeneration

Zenodo (CERN European Organization for Nuclear Research) 2026 Dataset Open access

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Authors: Aide Macias-Muñoz
DOI: 10.5281/zenodo.18393987
Cited by: 0

Abstract

Bash shell scripts for repeat modeler, masker, and STAR mapping. Custom script to keep class_id from repeat masker output (rmOUT_to_gtf.awk) Custom script to merge counts (R_script_merge_counts) Counts table including all genes and TEs used for analysis (tsv table) R script includes DDseq analysis, pairwise 12h comparisons, volcano plots, and heatmap code (Hydra_DDEseq_TE.r)

Fields of Study & Subjects

Marine Invertebrate Physiology and Ecology Chromosomal and Genetic Variations Developmental Biology and Gene Regulation

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
27 January 2026
Document type
Dataset