PlantCyc to WikiPathways: BioCyc flat-file to GPML2021 conversion pipeline

Socio-Environmental Systems Modeling 2026 Open access

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Authors: MaxMuller98, Elena Del Pup, Egon Willighagen
DOI: 10.5281/zenodo.18404067
Cited by: 0

Abstract

A pipeline to convert BioCyc/PlantCyc pathway data (BioCyc flat-file format) to GPML2021 (Graphical Pathway Markup Language) for upload to WikiPathways.

Fields of Study & Subjects

Bioinformatics and Genomic Networks Microbial Metabolic Engineering and Bioproduction Scientific Computing and Data Management

Publication details

Journal / source
Socio-Environmental Systems Modeling
Publication date
28 January 2026
Language
EN