ViralClust: A Nextflow pipeline to cluster viral sequences - raw data and results

Zenodo (CERN European Organization for Nuclear Research) 2026 Dataset Open access

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Authors: Sandra Triebel, Kevin Lamkiewicz, Tom Eulenfeld, Manja Marz
DOI: 10.5281/zenodo.18413372
Cited by: 0

Abstract

This is the repository for all raw data and results of the publication: Triebel, S., Lamkiewicz, K., Marz, M. Reducing haystacks to needles - ViralClust: A Nextflow pipeline to cluster viral sequences. bioRxiv (2026). https://www.biorxiv.org/content/10.64898/2026.01.30.702815v1 The files include: raw_data.tar.gz - raw sequences download from NCBI Clustering results using ViralClust Orthoebolavirus - orthoebolavirus_viralclust.tar.gz Hepacivirus hominis (HCV) - hcv_viralclust.tar.gz Orthoflavivirus - flavivirus_viralclust.tar.gz Flaviviridae - flaviviridae_viralclust.tar.gz Alphainfluenzavirus influenzae (formerly Influenza A virus, IAV) - iav_viralclust.tar.gz Monkeypox virus - mpox_viralclust.tar.gz iav_clustering_70-90.tar.gz - Number of clusters for IAV dataset with 70 - 90 % sequence similarity while clustering

Fields of Study & Subjects

Genomics and Phylogenetic Studies Scientific Computing and Data Management Bacteriophages and microbial interactions

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
29 January 2026
Document type
Dataset