Scripts for image analysis in: Remodeling of intrinsic tongue muscles in a Duchenne muscular dystrophy mouse model

This repository contains custom image analysis scripts used to quantify muscle fibre size, fibre number, regeneration, and fibrosis in intrinsic tongue muscles and the masseter muscle of mdx5cv mouse model of DMD and wild-type mice. The scripts were applied to histological sections analysed using QuPath as part of the study “Remodeling of intrinsic tongue muscles in a Duchenne muscular dystrophy mouse model: regional differences in fibre size and regeneration.” These scripts are provided to support transparency and reproducibility of the analyses reported in the associated manuscript.