Code for RNA-seq analysis and statistical visualization in "Protein craving links larval signals to food provisioning in honey bees"

This repository contains the custom R scripts used for RNA-seq data analysis, statistical analysis, and figure generation in the manuscript titled "Protein craving links larval signals to food provisioning in honey bees". The code includes the following main components: RNA-seq data processing: Scripts for quality control, filtering, and differential expression analysis. Data visualization: Scripts for generating various plots, including boxplots, scatter plots, PCA plots, heatmaps, volcano plots, and violin plots, to visualize results. Statistical analysis: Scripts for performing statistical tests.