crc-scenic: SCENIC-based regulatory network analysis of tumour-associated stroma in colorectal cancer

Zenodo (CERN European Organization for Nuclear Research) 2026 Open access

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Authors: James Malcolm Howie
DOI: 10.5281/zenodo.18471337
Cited by: 0

Abstract

Initial public release of the crc-scenic workflow used in Frank et al. (2026), including SCENIC loom preparation, multirun execution notes, and downstream Seurat integration/ORA analysis. Full Changelog: https://github.com/HowieJM/crc-scenic/commits/v1.0.0

Fields of Study & Subjects

Single-cell and spatial transcriptomics Genomics and Chromatin Dynamics Gene Regulatory Network Analysis

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
3 February 2026