Blanqui-ruizm/Amplicon-based-microbial-community-analysis-16S-and-ITS-: v1.0.0

Zenodo (CERN European Organization for Nuclear Research) 2026 Open access

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Authors: Blanca Ruiz Muñoz
DOI: 10.5281/zenodo.18484627
Cited by: 0

Abstract

This repository contains the R scripts used for the downstream analysis of 16S and ITS amplicon sequencing data. The pipeline starts from the ASV/OTU tables, taxonomy assignments, and metadata, and performs filtering, diversity analyses, ordination, differential abundance testing, and visualization.

Fields of Study & Subjects

Microbial Community Ecology and Physiology Genomics and Phylogenetic Studies Gut microbiota and health

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
4 February 2026