Xenium ROI Cropping + FICTURE Workflows

Zenodo (CERN European Organization for Nuclear Research) 2026 Open access

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Authors: Yaseer A. Sabir, Mingxia Huang, Alberto Cruz‐Martín
DOI: 10.5281/zenodo.18490062
Cited by: 0

Abstract

An open-source workflow for applying segmentation-free spatial factorization (FICTURE / punkst) to 10x Xenium datasets, including Napari-based ROI cropping and multi-sample joint inference.

Fields of Study & Subjects

Single-cell and spatial transcriptomics Cell Image Analysis Techniques Gene expression and cancer classification

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
5 February 2026