HitFrequencyVectors

Read full text
Authors: Nathalie Gocht, Alexander Schliep
Cited by: 0

Abstract

The datasets contain each 5 million query sequences (16-mers) with there according Hit Frequency Vectors. Hit Frequency Vectors conain information on the number of occurances of approximated strings given a dissimilarity threshold. Columns: site, bin[0-16] (one column per bin) HDE contains exactly computed Hit Frequency Vectors based on Hamming distance HDA contains approximated Hit Frequency Vectors based on Hamming distance EDA contains approximated Hit Frequency Vectors based on edit distance The zipped folders contain prediction results for each of the datasets for 2 predicitve models BUT and KD.

Fields of Study & Subjects

Algorithms and Data Compression Fractal and DNA sequence analysis Genomics and Phylogenetic Studies

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
5 February 2026
Language
EN
Document type
Dataset