Chromosome + Cell Mini-Pipeline

Zenodo (CERN European Organization for Nuclear Research) 2026 Open access

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Authors: Almotasem Bellah Younis
DOI: 10.5281/zenodo.18500689
Cited by: 0

Abstract

A combined genomics and microscopy analysis pipeline demonstrating end-to-end Hi-C chromatin analysis and nuclei segmentation. Uses cooltools/cooler for Hi-C (compatible with HiCognition) and StarDist for nuclei segmentation. Built for reproducibility and alignment with chromosome organization research.

Fields of Study & Subjects

Genomics and Chromatin Dynamics Cell Image Analysis Techniques Single-cell and spatial transcriptomics

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
6 February 2026