Code for Programmable macromolecule delivery via engineered trogocytosis (chenxy19/TRANSFER-v3: TRANSFER v1.0)

Code for identifying cell type-specific surface markers in TRANSFER (cell_surface_marker_identification_tool/) and for analyzing imaging data from the TRANSFER paper (image_analysis_code_and_demo/). Citation Xinyi Chen, Yinglin Situ, Yuexuan Yang, Luna Lyu, Mengting Han, Lorenzo Magni, Maylin L. Fu, Boxiong Deng, Sui Wang, Lei S. Qi. Programmable macromolecule delivery via engineered trogocytosis. Nature Cell Biology. 2026 (Accepted in principle). References Previously published RNA single cell type data and RNA single cell type tissue cluster data from the Human Protein Atlas (HPA) at https://v23.proteinatlas.org, cell surface protein atlas at https://wlab.ethz.ch/cspa, cell type marker data at https://panglaodb.se/index.html and http://bio-bigdata.hrbmu.edu.cn/CellMarker/ were used for computational analysis. Thul, P. J. & Lindskog, C. The human protein atlas: a spatial map of the human proteome. Protein Sci. 27, 233–244 (2018). Bausch-Fluck, D. et al. A mass spectrometric-derived cell surface protein atlas. PLoS One 10, e0121314 (2015). Franzén, O., Gan, L.-M. & Björkegren, J. L. M. PanglaoDB: a web server for exploration of mouse and human single-cell RNA sequencing data. Database 2019, baz046 (2019). Hu, C. et al. CellMarker 2.0: an updated database of manually curated cell markers in human and mouse and web tools based on scRNA-seq data. Nucleic Acids Res. 51, D870–D876 (2023).