AOS example public dataset

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Authors: Ward Deboutte
Cited by: 0

Abstract

Attached are cram files and metadata for two public datasets, that can be used as examples in the AOS workflow. The first is from Gaidatzis et al. (2025, 10.1101/2025.09.04.674194), the second sourced from Immgen - Yoshide et al. (2019, 10.1016/j.cell.2018.12.036). Data have been processed using snakePipes version 3.2.0, reference genomes and data sources are included in this repository. Note that this data is provided to exemplify the usage of AOS and should thus only be used within that context.

Fields of Study & Subjects

Scientific Computing and Data Management Single-cell and spatial transcriptomics Genomics and Phylogenetic Studies

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
1 January 2026
Document type
Dataset