Data for pAo-GEM project

Zenodo (CERN European Organization for Nuclear Research) 2026 Dataset Open access

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Authors: Jeroen Gilis, Casper Robert Balten van der Luijt, Candela Sanchez-Giron Barba, Marilena Feller, Morten Otto Alexander Sommer, Leonie Johanna Jahn, Eduard Kerkhoven
DOI: 10.5281/zenodo.18598683
Cited by: 0

Abstract

Dataset associated with our manuscript "pAo: a consensus genome-scale metabolic model for Aspergillus oryzae capturing intra-species diversity", currently under review. Most important assets available here are: allModels.zip with SBML-format GEMs for all 187 strains, the pAo-GEM and the template model; pAo_strain-GEMs_all-187.pickle with the medusa-style pickle of the same models; memote_reports.zip with the MEMOTE reports for pAo-GEM, and the 8 strain-GEMs that are studied in more detail in the manuscript. More code is available from GitHub repository..

Fields of Study & Subjects

Microbial Metabolic Engineering and Bioproduction Fungal and yeast genetics research Gene Regulatory Network Analysis

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
10 February 2026
Language
EN
Document type
Dataset