Simulation Starts and Analysis Scripts for Condensates and MT-Condensate Systems

Zenodo (CERN European Organization for Nuclear Research) 2026 Dataset Open access

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Authors: Aswin Vinod Muthachikavil, Ayush Seal, Christoph Allolio, Thomas D. Kühne
DOI: 10.5281/zenodo.18619560
Cited by: 0

Abstract

This repository contains simulation starts and analysis scripts for condensates and microtubule (MT)-condensate systems The dataset includes: Python scripts for performing molecular dynamics (MD) simulations using OpenMM Force-field parameters for Calvados3-simulations of MT-Condensate systems Analysis scripts used for key analyses of the simulation trajectories Input files necessary to perform the simulations The scripts are written in Python and require standard/specialised scientific Python libraries and/or OpenMM for execution.

Fields of Study & Subjects

Microtubule and mitosis dynamics Protein Structure and Dynamics Genomics and Chromatin Dynamics

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
12 February 2026
Language
EN
Document type
Dataset