AZ-Laboratory/microfluidics-image-processing: update conda env, delta script & add parallelization to stardist
Abstract
Ready-to-use code for microfluidic image processing for mother-machine and connected-chambers of Staphylococcus aureus (and possibly other coccoid bacteria). This is using MATLAB for ROI detection and extraction as well as stage drift compensation and Python for StarDist2D based single-cell segmentation as well as DeLTA2.0 for 2D cell tracking and lineage reconstruction.
Fields of Study & Subjects
Cell Image Analysis Techniques
Digital Image Processing Techniques
Image Processing Techniques and Applications
Publication details
- Journal / source
- Zenodo (CERN European Organization for Nuclear Research)
- Publication date
- 12 February 2026
- Language
- EN