bioinf-mcb/mgg_gwas: v1.0.1 – GWAS pipeline linking prophage protein clusters to Klebsiella K-loci

This release corresponds to the exact version of the genome-wide association study (GWAS) pipeline used in the manuscript: "Capsular specificity in temperate phages of Klebsiella pneumoniae is driven by diverse receptor-binding enzymes". The code implements elastic-net GWAS analyses linking prophage protein clusters to bacterial capsular (K-locus) types, with correction for population structure using sequence clusters. This release is archived to ensure reproducibility of the published results and to enable proper citation of the software. Added compatibility after second round of revision in PLOS Biology.