SPINGO Pipeline: Automated 16S Microbiome Analysis

Zenodo (CERN European Organization for Nuclear Research) 2026 Open access

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Authors: Dinesh Palanimuthu
DOI: 10.5281/zenodo.18646464
Cited by: 0

Abstract

An automated pipeline for processing 16S microbiome sequences using SPINGO (SPecies level IdentificatioN of metaGenOmic amplicons). The pipeline handles single-end and paired-end FASTQ files, performs taxonomic classification, and generates species abundance matrices for downstream analysis.

Fields of Study & Subjects

Genomics and Phylogenetic Studies Microbial Community Ecology and Physiology Gut microbiota and health

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
15 February 2026
Language
EN