Analysis Code for Periodic Intrinsic Optical Imaging of Visual Maps in the Mouse SC and V1
Abstract
This repository contains the MATLAB analysis code used in the protocol “Protocol for recording visual maps in the mouse superior colliculus and visual cortex with intrinsic optical imaging” (STAR Protocols). The code implements Fourier-based analysis of periodic intrinsic optical imaging (IOI) data to compute retinotopic maps, orientation preference maps, and ocular dominance maps from forward and reverse visual stimulation paradigms. It also includes a representative superior colliculus dataset for retinotopy analysis.
Fields of Study & Subjects
Visual perception and processing mechanisms
Neural dynamics and brain function
Neuroscience and Neuropharmacology Research
Publication details
- Journal / source
- Zenodo (CERN European Organization for Nuclear Research)
- Publication date
- 16 February 2026
- Language
- EN
- Document type
- Dataset