Analysis code for Lee et al.

This repository contains the analysis code for the following publication: Post-mitotic transcriptional activation and 3D regulatory interactions show locus- and differentiation-specific sensitivity to cohesin depletion UkJin Lee, Alejandra Laguillo-Diego, Daniela Magliulo, Wilfred Wong, Kritika Kasliwal, Zhangli Ni, Lingling Cheng, Jieru Li, Bobbie Pelham-Webb, Alexandros Pertsinidis, Christina Leslie, Effie Apostolou Included analyses Micro-C processing pipeline Micro-C analysis Loop analysis Virtual 4C and 4C-seq RNA-seq analysis Miscellaneous analysis & utilities Data availability Raw and processed data: GSE288339