fgcz/prolfqua: v.1.5.0

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Authors: Witold Wolski, Christian Panse, Jonas Grossmann, Nicholas A. Del Grosso
Cited by: 0

Abstract

prolfqua v1.5.0 New features limma backend — drop-in modelling backend using limma moderated t-tests DEqMS backend — count-dependent variance moderation via DEqMS Improvements Refactored AnalysisConfiguration with updated docs and vignettes Added formal testthat tests for LFQData, Contrasts, and Model classes Expanded Contrasts_from_factors vignette with content Replaced deprecated dplyr/tidyr/ggplot2 calls with modern equivalents Bug fixes Fixed pheatmap double-rendering by overriding print.pheatmap Fixed lfqdata$conf → lfqdata$config typo Fixed vignette variable shadowing and namespace NOTEs for R CMD check Fixed deprecated config bindings and config_f closures in bundled data Cleanup Removed LFQDataWriter, lfq_write_table, and unused dependency imports Reduced package size: clean data closures, xz compression Added Makefile and modernized CI/pkgdown workflow

Fields of Study & Subjects

Advanced Proteomics Techniques and Applications Bioinformatics and Genomic Networks Genomics and Phylogenetic Studies

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
25 February 2026
Language
EN