codonpipe - a codon usage clustering pipeline
Abstract
Initial release of the "codonpipe" Python pipeline that (i) extracts codon usage tables from FASTA files, (ii) computes 2D gene clustering on codon usage similarity and (iii) exports data and (iv) imports and projects custom gene clusters in this 2D embedded space.
Fields of Study & Subjects
RNA and protein synthesis mechanisms
Genomics and Phylogenetic Studies
Fractal and DNA sequence analysis
Publication details
- Journal / source
- Zenodo (CERN European Organization for Nuclear Research)
- Publication date
- 27 February 2026
- Language
- EN