Building computational benchmarks: an Omnibenchmark reimplementation of a single-cell preprocessing pipeline evaluation

Zenodo (CERN European Organization for Nuclear Research) 2026 Open access

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Authors: Atreya Choudhury, Tom Kitak, Ben Carrillo, Aidan Meara, Siyuan Luo, Martin Emons, Samuel Gunz, Mark Robinson
DOI: 10.5281/zenodo.18848104
Cited by: 1

Abstract

We benchmark five single-cell RNAseq preprocessing pipelines across three datasets and study their clustering accuracy under different metrics. The repo contains a snapshot of the benchmarking artefacts produced using the Omnibenchmark framework. CHANGELOG

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
3 March 2026
Language
EN