Epitope_Match_RD: HIV Epitope Matching Pipeline (v1.0.0)
Abstract
Epitope_Match_RD is a Python-based bioinformatics pipeline for matching sequencing reads to predefined HIV epitopes referenced to HXB2 coordinates. The pipeline applies a configurable identity threshold (≥80% by default) to quantify epitope-level sequence similarity. The repository includes a SLURM array runner for high-throughput processing, curated epitope coordinate definitions, and reference sequence resources to enable reproducible analysis in HIV sequencing studies.
Fields of Study & Subjects
HIV Research and Treatment
Genomics and Phylogenetic Studies
vaccines and immunoinformatics approaches
Publication details
- Journal / source
- Zenodo (CERN European Organization for Nuclear Research)
- Publication date
- 3 March 2026
- Language
- EN