synth-nmr: NMR spectroscopy calculations for protein structures

Read full text
Authors: George Elkins
Cited by: 0

Abstract

A lightweight, standalone Python package for calculating NMR observables from protein structures. Provides tools for NOE distance restraints, R1/R2/heteronuclear NOE relaxation rates, chemical shift prediction (SHIFTX2 with SPARTA+ fallback), J-couplings via the Karplus equation, residual dipolar couplings (RDCs), ensemble/MD-averaged NMR observables, and NMR Exchange Format (NEF) I/O. Originally extracted from the synth-pdb package to provide a focused toolkit compatible with any protein structure source including PDB files, AlphaFold predictions, and MD simulations.

Fields of Study & Subjects

Advanced NMR Techniques and Applications Protein Structure and Dynamics Molecular spectroscopy and chirality

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
4 March 2026
Language
EN