NeuroTrace - Python tool for handeling IMARIS datasets with metadata tracking
Abstract
Fixes & Changes Fixed Dendrite branch points extraction now reads the correct cell (A3) in the Imaris Excel sheet. The previous offset read a value from the Sholl analysis section instead, causing branch point counts to be empty in all grouped exports. Changed Grouped condition export (dendrite path) no longer prints per-file debug output by default. A progress bar is shown instead; debug output is preserved behind the existing debug toggle. Grouped condition export (spine path) similarly replaced per-condition print output with a progress bar when debug is off. LICENSE updated to credit Jan Hawlicki and contributors. Citation Hawlicki, J. (2026). NeuroTrace v2.0.2 - Python tool for handeling IMARIS datasets with metadata tracking (v2.0.2). Zenodo. https://doi.org/10.5281/zenodo.18860663
Fields of Study & Subjects
Cell Image Analysis Techniques
Research Data Management Practices
Scientific Computing and Data Management
Publication details
- Journal / source
- Zenodo (CERN European Organization for Nuclear Research)
- Publication date
- 4 March 2026
- Language
- EN