Example Snakemake Report

Zenodo (CERN European Organization for Nuclear Research) 2026 Open access

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Authors: Christian Meesters
DOI: 10.5281/zenodo.18860871
Cited by: 0

Abstract

This is an example report for the Snakemake analysis workflow to analyse differential gene expression and isoform splicing analysis on Nanopore long-read RNA-Seq data using minimap2, Salmon, and DESeq2 : https://github.com/snakemake-workflows/rna-longseq-de-isoform/

Fields of Study & Subjects

Genomics and Phylogenetic Studies Single-cell and spatial transcriptomics RNA Research and Splicing

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
4 March 2026
Language
EN