TogoMCP: Natural Language Querying of Life-Science Knowledge Graphs via Schema-Guided LLMs and the Model Context Protocol (GitHub repo snapshot, v1.0.0)
Abstract
The source code of TogoMCP, a Model Context Protocol (MCP) server enabling natural-language queries to the RDF Portal, an integrated RDF database that aggregates roughly 60 life science data resources. This version is the one used in the Database paper. Changes since the last version: Now handles 28 life science databases (previously 23) Revised tool descriptions (docstrings) and LLM-friendly error messages. The new "find_databases" tool for more efficient database discovery. Reran the benchmark.
Fields of Study & Subjects
Semantic Web and Ontologies
Biomedical Text Mining and Ontologies
Natural Language Processing Techniques
Publication details
- Journal / source
- Zenodo (CERN European Organization for Nuclear Research)
- Publication date
- 8 March 2026
- Language
- EN