Phage Bacteria Interaction pipeline

Zenodo (CERN European Organization for Nuclear Research) 2026 Open access

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Authors: Thibault Schowing
DOI: 10.5281/zenodo.18961926
Cited by: 0

Abstract

A bioinformatics pipeline that makes phage genomic data from PhageScope available in an efficient, structured format for training neural networks and AI models for phage-host interaction prediction. PBI integrates data from 14 phage databases (RefSeq, Genbank, PhagesDB, etc.) and downloads matching bacterial host genomes from NCBI RefSeq, consolidating everything into a queryable DuckDB database with indexed FASTA files.

Fields of Study & Subjects

Bacteriophages and microbial interactions Genomics and Phylogenetic Studies Evolution and Genetic Dynamics

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
11 March 2026
Language
EN