teanijarv/yabplot: 0.4.0

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Authors: Toomas Erik Anijärv, jadenecke, Anthony Barrows
Cited by: 1

Abstract

What's Changed refactoring of how brain context meshes are being handled. 'bmesh_type' parameter has been renamed to 'bmesh'. users can now supply their own mesh for yab.plot_subcortical() and yab.plot_tracts(). contributions from @ajbarrows in https://github.com/teanijarv/yabplot/pull/5 yab.plot_tracts() supports now visualisation of tractometry data. contributions from @jadenecke in https://github.com/teanijarv/yabplot/pull/4 data projection has been now put into its own module, with new added projection functions yab.project_vol2tract() and yab.project_vol2tract_atlas() which enable users to project nifti images to white matter tracts to visualise with yab.plot_tracts() fix in yab.scene.add_context_to_view() where previously the opposite hemisphere brain meshes were displayed data fetching overhaul for basing the fetched data on versions fixed subcortical atlases not using the order of the atlas labels file, but kept alphabetical label ordering as fallback in case no label file is found. issue brought up in https://github.com/teanijarv/yabplot/issues/7 some atlases labels have changed due to the last point (eg in 'aseg' the 'Left_Amgdala' is now 'Left-Amygdala' etc) New Contributors @jadenecke made their first contribution in https://github.com/teanijarv/yabplot/pull/4 Full Changelog: https://github.com/teanijarv/yabplot/compare/0.3.1...0.4.0

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
4 April 2026