nataliefalshaw/long_term_fasting_gut_virome: v1.0.0-submission

Code accompanying the manuscript titled "Remodelling of the gut virome after long-term fasting". This repository contains figure-ordered R scripts for analysing gut virome dynamics during prolonged fasting using shotgun metagenomic profiling (Phanta). Analyses include alpha and beta diversity, viral lifestyle classification, differential abundance modelling (MaAsLin2), cross-cohort validation, host mapping, and cross-domain virus-bacteria correlation networks. The repository is provided as a minimal, reproducible archive of the analytical workflow used to generate all main and supplementary figures.