nf-core/rnaseq: nf-core/rnaseq v3.24.0 - Selenium Seahorse

What's Changed fix: always set ID/SM read group tags; bump version to 3.24.0dev by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1740 fix: always skip igenomes_base validation by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1745 fix: update bowtie2 modules to fix version extraction with Perl locale warnings by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1749 docs: add missing tool citations to CITATIONS.md by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1750 feat: add --skip_quantification_merge for per-sample tximport by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1744 docs: clarify GFF files must use --gff parameter by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1751 Add evaluation of trimmed data and aligners kranken - check contamination before aligners - enhancement by @EladH1 in https://github.com/nf-core/rnaseq/pull/1746 Fix iGenomes STAR version detection and index building logic by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1756 fix: remove STAR from RSEM conda environments for ARM compatibility by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1752 fix: restore extra_star_align_args dedup to prevent STAR duplicate parameter error by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1762 fix: distinguish Bowtie2 alignment from rRNA removal in MultiQC report by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1761 Add RustQC as optional single-pass QC replacement by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1754 chore: Update nf-core template to v3.5.2 by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1764 Bump version to 3.24.0 ahead of release by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1763 Update samtools modules to 1.23.1 by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1766 Remove --star from RSEM preparereference test config by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1769 Exclude non-deterministic qualimap multiqc files from snapshots by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1770 Update actions/upload-artifact from v3 to v7 in cloud test workflows by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1768 Update ribodetector module to 0.3.3 by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1771 Update ribodetector ARM64 container to 0.3.3 by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1772 Fix megatest debug log upload on launch failure by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1774 Update RustQC to 0.2.1 by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1779 docs: clarify test profile requirement for local nf-test runs by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1778 Dev -> master for nf-core/rnaseq 3.24.0 by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1765 Full Changelog: https://github.com/nf-core/rnaseq/compare/3.23.0...3.24.0