Docker Images for Intersection of Regulatory Analysis and Signature Reversion Uncovers Therapeutic Drugs and Targets for SETBP1-HD

SETBP1-HD Pipeline Docker Containers This repository contains the tarred, compressed Docker images required to run the reproducible analytical pipeline (https://github.com/lasseignelab/setbp1_hd) for the project: Intersection of Regulatory Analysis and Signature Reversion Uncovers Therapeutic Drugs and Targets for SETBP1-HD. Included Files: lw_models_0_1_1.tar.gz: (lizzyr/lw_models:0.1.1) Environment for RNA-seq data cleaning and exploratory data analysis (EDA). lw_dea_0_3_1.tar.gz: (lizzyr/lw_dea:0.3.1) Environment for differential expression analysis (DEA), consensus signature generation, and spatiotemporal permutation testing. sigsearch_1_0_0.tar.gz: (lizzyr/sigsearch:1.0.0) Environment for conducting LINCS database signature reversion queries and drug-target intersections. sra_tools_3_2_1.tar.gz: (ncbi/sra_tools:3.2.1) Tooling for retrieving raw sequencing data from public repositories. (Credit: Built from the official ncbi/sra-tools image provided by NCBI). sitemap_scraper_260507.tar.gz: (projectassistant/sitemap-scraper:latest) Environment for scraping pediatric and pregnancy drug safety profiles. (Credit: Built from the projectassistant/sitemap-scraper image). Each of these images are also publicly available on DockerHub (hub.docker.com)