nf-core/rnaseq: nf-core/rnaseq v3.26.0 - Chromium Cuttlefish

What's Changed Bump version after release 3.25.0 by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1821 Patch release 3.25.1: trimgalore same-workdir-retry cleanup by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1823 docs(changelog): restore #1821 entry under 3.25.1 by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1824 Disambiguate FastQC General Stats columns; revert 3.25.1 release bump by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1829 bump(trimgalore): module to 2.1.0 (TrimGalore v2 Oxidized Edition GA) by @FelixKrueger in https://github.com/nf-core/rnaseq/pull/1789 Important! Template update for nf-core/tools v4.0.2 by @nf-core-bot in https://github.com/nf-core/rnaseq/pull/1827 Important! Template update for nf-core/tools v4.0.0 by @nf-core-bot in https://github.com/nf-core/rnaseq/pull/1826 Suppress non-comparable lengthScaledTPM gene-count files in --skip_quantification_merge mode by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1832 fix(tximport): publish augmented tx2gene actually used by tximport by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1831 feat(star): gate legacy STAR pin on per-entry star_legacy flag by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1834 Drop legacy STAR 2.6.1d pin; upgrade iGenomes index params instead by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1835 Reinstall trimgalore + add process_low_memory label to base.config by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1836 Bump version to 3.26.0 ahead of release by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1837 Address review feedback from #1838 by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1839 Address review feedback from #1838 (Vag) by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1840 fix(trimgalore): restore --cores 8 by pinning TRIMGALORE to 12 cpus by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1841 fix(trimgalore): drop TRIMGALORE override from 12 to 8 cpus by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1842 Dev -> master for nf-core/rnaseq 3.26.0 by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1838 New Contributors @FelixKrueger made their first contribution in https://github.com/nf-core/rnaseq/pull/1789 Full Changelog: https://github.com/nf-core/rnaseq/compare/3.25.0...3.26.0