Molecular AOP Builder — Curated KE → WikiPathways / GO / Reactome Mappings

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Authors: Marvin Martens
Cited by: 2

Abstract

Curated database of Key Event (KE) mappings to three molecular-pathway and ontology resources: WikiPathways (KE-WikiPathways), Gene Ontology Biological Process and Molecular Function (KE-GO), and Reactome (KE-Reactome). Mappings are bundled in three per-resource ZIP archives, each containing GMT gene-set files split by confidence level (All / High / Medium / Low) for clusterProfiler and fgsea, and RDF/Turtle for SPARQL and linked-data consumption. Each mapping carries a stable UUID and full curation provenance (proposer, approving curator, approval timestamp, BioBERT suggestion score, confidence level, connection type). Upstream snapshot for this deposit: WP 2026-07-10 · GO 2026-06-15 · Reactome v97 (2026-06-17) · AOP-Wiki 2026-08-06. Produced by the Molecular AOP Builder at https://molaop-builder.vhp4safety.nl ; source at https://github.com/marvinm2/molAOP-builder .

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
13 August 2026
Document type
Dataset