nthndy/macrohet: macrohet: Single-cell analysis of intracellular Mycobacterium tuberculosis population heterogeneity in iPSC-derived macrophages

Initial release accompanying the publication: "Fast-growing intracellular Mycobacterium tuberculosis populations evade antibiotic treatment" — Day et al., Nature Communications (2026). This release contains the analysis code used to generate all single-cell quantification, segmentation, tracking, and figure outputs in the manuscript, including single-cell segmentation and tracking pipelines for live-cell timelapse microscopy The processed single-cell dataset (singlecell_trajectories_dataframe.parquet) is deposited separately on Zenodo [DOI 10.5281/zenodo.20831464].