CryoAtom v1.0.0: software for automated protein model building from cryo-EM density maps

This record archives CryoAtom v1.0.0 for reproducible citation. CryoAtom is software for automated de novo protein model building from cryo-electron microscopy (cryo-EM) density maps and sequence information. Version 1.0.0 corresponds to the release in which CryFold v1.3.2 was renamed to CryoAtom and supports protein model building and sequence identification. CryoAtom predicts Cα atom positions from cryo-EM density maps and builds full-atom protein structural models by combining density and sequence information, followed by model post-processing. This archive preserves the source code and associated files corresponding to CryoAtom v1.0.0. If you use CryoAtom, please cite: Su, B., Huang, K., Peng, Z. et al. CryoAtom improves model building for cryo-EM. Nat Struct Mol Biol 33, 351–361 (2026). https://doi.org/10.1038/s41594-025-01713-3