Karolinska-AMR/q2-pipeline: q2-pipeline v1.0.0 — Glasmacinal gut microbiome study

q2-pipeline v1.0.0 This release provides the version of the microbiome analysis code used in the study: "Impact of the anti-inflammatory macrolide glasmacinal (EP395) on the gut microbiota of healthy adults: an open-label trial". The repository contains the workflows and scripts used for: 16S rRNA gene sequence processing and taxonomic assignment; microbiome diversity and differential-abundance analyses; 16S rRNA gene copy-number correction and sensitivity analyses; and generation of the principal statistical results reported in the manuscript and its Supplementary Information. This release is intended to provide a fixed, reproducible snapshot of the code associated with the submitted manuscript. The corresponding sequencing data are available through the NCBI Sequence Read Archive under BioProject accession PRJNA1377574. Repository: https://github.com/Karolinska-AMR/q2-pipeline Version: 1.0.0 Release date: 2026 Associated manuscript: Impact of the anti-inflammatory macrolide glasmacinal (EP395) on the gut microbiota of healthy adults: an open-label trial The archived release and its permanent DOI are available through Zenodo.